RnoEX0009638 @ rn6
Exon Skipping
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142756617-142757437:+
Coord C1 exon
chr7:142756617-142756781
Coord A exon
chr7:142757018-142757143
Coord C2 exon
chr7:142757297-142757437
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCTGTCCCCAGACAGGCC
3' ss Score
4.42
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATGACTGAGGCACCGCCCTGTCCAGGCGGCAAGACACCAAGTCCTGGATGCGGTCTGAAGACGCTGTACTGGGCATGTGTCCACAATGACCTCGCTGAGCTCCAAGCCAGGCTGGACGTCGGGGTGTCTCCAGATGAGGCCTCCCAAGTGGACGGCAATGGGAGG
Seq A exon
GCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
Seq C2 exon
GTCATGTGCCTCTGGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTGACAGCTCTGATGAAGGCTGCCATTCGGGACCGCTCTGAGTGTGTGGTTGCACTCCTTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733-'1-6,'1-5,2-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=60.0)
A:
PF127962=Ank_2=FE(60.6=100)
C2:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(44.7=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACTGGGCATGTGTCCAC
R:
TGCCATAAGGAGTGCAACCAC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]