HsaEX0004469 @ hg19
Exon Skipping
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:13788]
Coordinates
chr12:52282352-52283266:+
Coord C1 exon
chr12:52282352-52282602
Coord A exon
chr12:52282851-52282980
Coord C2 exon
chr12:52283156-52283266
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTGAGCTGCCCCTCCCTCAGACA
3' ss Score
6.12
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
Seq A exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
Seq C2 exon
GCCACGTGCCTCTAGTGAGTCTCCTGCTCAACTACTATGTGGGCCTGGACCTGGAACGCCGGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATGCGGAACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=39.3)
A:
PF127962=Ank_2=FE(43.4=100)
C2:
PF127962=Ank_2=PD(33.9=43.8),PF127962=Ank_2=PU(44.7=70.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAGAGCTGGCATTGC
R:
GGTCCAGGCCCACATAGTAGT
Band lengths:
254-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)