MmuEX0005111 @ mm9
Exon Skipping
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100946546-100947456:+
Coord C1 exon
chr15:100946546-100946779
Coord A exon
chr15:100947008-100947137
Coord C2 exon
chr15:100947316-100947456
Length
130 bp
Sequences
Splice sites
3' ss Seq
CAAGCTGCTCTGTCCCCTAGACA
3' ss Score
7.74
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGG
Seq A exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq C2 exon
GTCACATGTCTCTTGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTCACAGCTCTGATGAAGGCTGCCATTCAAGATCGCTCCGAGTGTGTAGTTGCCCTCCTTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=60.0)
A:
PF127962=Ank_2=FE(60.6=100)
C2:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(45.3=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCAGCAACAAGACCTC
R:
AATGGCAGCCTTCATCAGAGC
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: