MmuEX0005112 @ mm10
Exon Skipping
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:101115755-101116706:+
Coord C1 exon
chr15:101115755-101115902
Coord A exon
chr15:101116115-101116348
Coord C2 exon
chr15:101116577-101116706
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGCGTTTTGTCATAGCTG
3' ss Score
6.19
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCTTGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGGTGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCCCAG
Seq A exon
CTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGG
Seq C2 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
NO
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
ENSMUST00000070875fB428
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCTGCAGGCACAGC
R:
GCATGAGGGCTGTGTTCCC
Band lengths:
260-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types