HsaEX6066594 @ hg19
Exon Skipping
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:13788]
Coordinates
chr12:52281793-52282980:+
Coord C1 exon
chr12:52281793-52282115
Coord A exon
chr12:52282352-52282602
Coord C2 exon
chr12:52282855-52282980
Length
251 bp
Sequences
Splice sites
3' ss Seq
CTCTCCATTCTGTGTTTTAGATG
3' ss Score
10.7
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
AGTCGTCTTTGTGAGCCCGCCCCGGCGGGGAGGAGCTGCCCGGCTCAGGCCCCGCCCACCCGGAGGATCTTGGGGCTGGTCTGAGTCCGCTCCTGAGACGTGACCACCCGCCCCGCATGGGGCCCCAGTCCCAGCTGCTTGATCCGGCTCAGCCCCGAGGTGTTTGCAGCAGCTCTTTATGAAAGTCCAGCCATCTGTTACCTGCGTTGCTTCCTGGGGAGGGATAGTCCACCTGGAGGCATTCGGAGACCCAGTGATTGTGCTCCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAGATACCCTACGAACCCCAA
Seq A exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
Seq C2 exon
GCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-'0-2,'0-0,1-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(33.3=39.3)
C2:
PF127962=Ank_2=PU(64.5=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGGGCTGGTCTGAGTC
R:
AACACTCTGGAAGCCGTGGTA
Band lengths:
295-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)