RnoEX0009639 @ rn6
Exon Skipping
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142756312-142757143:+
Coord C1 exon
chr7:142756312-142756332
Coord A exon
chr7:142756546-142756781
Coord C2 exon
chr7:142757018-142757143
Length
236 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGTGTACTGTCACAGCTG
3' ss Score
5.54
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
TTGGAGACCCTAGAGCCCCAG
Seq A exon
CTGCCTGCTGAATGAAAAGGGACTTGGGCTGCAGGCAGAGGAGCCACTGTCGCCCCTGGAGCGGACTGGACATGACTGAGGCACCGCCCTGTCCAGGCGGCAAGACACCAAGTCCTGGATGCGGTCTGAAGACGCTGTACTGGGCATGTGTCCACAATGACCTCGCTGAGCTCCAAGCCAGGCTGGACGTCGGGGTGTCTCCAGATGAGGCCTCCCAAGTGGACGGCAATGGGAGG
Seq C2 exon
GCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.418 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
NO
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
ENSRNOT00000071298fB1108
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGACCCTAGAGCCCCAG
R:
GCATGAGGGCTGTGTTCCC
Band lengths:
132-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]