MmuEX0005112 @ mm9
Exon Skipping
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100946186-100947137:+
Coord C1 exon
chr15:100946186-100946333
Coord A exon
chr15:100946546-100946779
Coord C2 exon
chr15:100947008-100947137
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGCGTTTTGTCATAGCTG
3' ss Score
6.19
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCTTGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGGTGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCCCAG
Seq A exon
CTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGG
Seq C2 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
PF127962=Ank_2=PU(33.3=60.0)
C2:
PF127962=Ank_2=FE(60.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCTGCAGGCACAGC
R:
GCATGAGGGCTGTGTTCCC
Band lengths:
260-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: