DreEX6023004 @ danRer10
Exon Skipping
Gene
ENSDARG00000002508 | ankrd33ab
Description
ankyrin repeat domain 33Ab [Source:ZFIN;Acc:ZDB-GENE-100729-1]
Coordinates
chr6:39281568-39285285:+
Coord C1 exon
chr6:39281568-39281849
Coord A exon
chr6:39282417-39282809
Coord C2 exon
chr6:39285156-39285285
Length
393 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTACTTCTAAACAGGGG
3' ss Score
8.27
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TCAAAGACCATTGTAAGAGTGAGTGTGTCTGTATGTGAAAGGTGATTATGCAGCGAATGTCTACATTGGATCCTTTCTGATCCTGAAAGGCATTAGTCGGTCTAATGACCTGAGGTGTACTGACAGAGCATGCATACGCCCATCTATGATCACATACTACACACACACTAGGTAGACGTGATGCTGATGGCTGTGTTTTCTGGAAGCTGATCTGAATTTTCTGATAATAGCGCTGTAAAAGTTGATACCAGGATACACTCTTCTTCTGAAATGTGGACATAG
Seq A exon
GGGTCATAAACACTTGGAGTGCATTCCTTCACCTCGGGTTTCTGACCTGCTGCAACCATGTTGAGACACTTTCCTCAGATGCCAGCAAAGATGCTGTAGACAAGATTGATCTGTTAAGGGATGGCAGCAGTTCAGAGCTCTGGCTTTGAGGACCCCCACCTGGGGTCATGCCCAGATGGAGATGAAATCTCACTTTTGGATGAAGACACAGACTCTGGAAGTTTGCTGTCTGAAGATTCCGTGCTCCCTGAGTATGAACTAGAGGATGGGAAAAAGGGAACTGCCAACACACTGTATGAGGCTTGTGTCCAGAATGACCCAGAAGCGCTGAAGAGGATTTTGGAACGTGGTGTGACCTGTGATGAGGTCATGGAAGTTGACATTAATGGATGG
Seq C2 exon
AATGGACTGATGGTGGCTGCATATAAAGGCTTTCTTCAAATAGTGTATGAGCTGCATGGGTGCCCACATTTGAACATTAACCACCAAGACAATGACGGCAACACCGCCCTTATGATCGCCGCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002508-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(33.3=36.3)
C2:
PF127962=Ank_2=FE(43.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAAGGTGATTATGCAGCGA
R:
TGTTGCCGTCATTGTCTTGGT
Band lengths:
352-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]