HsaEX6066594 @ hg38
Exon Skipping
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51887960-51889196:+
Coord C1 exon
chr12:51887960-51888331
Coord A exon
chr12:51888568-51888818
Coord C2 exon
chr12:51889067-51889196
Length
251 bp
Sequences
Splice sites
3' ss Seq
CTCTCCATTCTGTGTTTTAGATG
3' ss Score
10.7
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
ATCTCCGCCGGCGTCCCCAAGGCTGAGAGTGGGCGCGTCCGTCAGGAGGAGTCGTCTTTGTGAGCCCGCCCCGGCGGGGAGGAGCTGCCCGGCTCAGGCCCCGCCCACCCGGAGGATCTTGGGGCTGGTCTGAGTCCGCTCCTGAGACGTGACCACCCGCCCCGCATGGGGCCCCAGTCCCAGCTGCTTGATCCGGCTCAGCCCCGAGGTGTTTGCAGCAGCTCTTTATGAAAGTCCAGCCATCTGTTACCTGCGTTGCTTCCTGGGGAGGGATAGTCCACCTGGAGGCATTCGGAGACCCAGTGATTGTGCTCCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAGATACCCTACGAACCCCAA
Seq A exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
Seq C2 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-'0-2,'0-0,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(33.3=39.3)
C2:
PF127962=Ank_2=FE(43.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGGGCTGGTCTGAGTC
R:
AACACTCTGGAAGCCGTGGTA
Band lengths:
299-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains