DreEX0015937 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16806301-16809547:+
Coord C1 exon
chr3:16806301-16806451
Coord A exon
chr3:16807043-16807182
Coord C2 exon
chr3:16809384-16809547
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGCTCATGTGCTCAGCTC
3' ss Score
5.62
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GAGAGAAGTGGATCCACCGTTCCCTCCATCCTGAACAGAATGCAGACCAAACAGACGCCCCCCACCTACAACAAAACCAACAAGTTCACCTCTGGCTTTCAGAGTATCGTTGATGCATACGGCATCAGCAACTACCGGGAGATGAACCCAG
Seq A exon
CTCCATACACCATCATCACCTTCCCCTTCCTGTTTGCGGTCATGTTTGGTGATCTGGGTCACGGCGTGCTCATGACCTGTGCTGCACTTTATCTGGTACTGCGAGAGAGCCGATTAATTGCCCAGAAAAATGACAGCGAG
Seq C2 exon
ATGTTTAGCATGGTGTTCGCAGGCCGATACATTATCCTCCTGATGGGACTGTTTTCGATGTATACTGGCATTATCTACAATGACTGCTTCTCCAAGTCTCTCAATATCTTCGGCTCGGGATGGAGTGTCAGACCAATGTTTGGTGAAAAAGGAGACAACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.2=100)
A:
PF0149614=V_ATPase_I=FE(5.8=100)
C2:
PF0149614=V_ATPase_I=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCCTCCATCCTGAACAG
R:
TCCATCCCGAGCCGAAGATAT
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]