DreEX0015963 @ danRer10
Exon Skipping
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24053204-24057183:+
Coord C1 exon
chr5:24053204-24053414
Coord A exon
chr5:24053493-24053612
Coord C2 exon
chr5:24057064-24057183
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTTATTCTGTTTCCTATAGGCT
3' ss Score
9.88
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCACTTCAGACGGACAATCAATGTGTACCTGATTTTTCTTCCCGAGCTGCTCTTTCTGCTGTGTCTCTTCGGTTATCTGGTGTTCATGATCATCTATAAGTGGCTCTTCTTCACAGTCAGAGATTCTCAGACAGCTCCCAGCATCCTCATCCACTTTATCAACATGTTCCTGATGATGGGCGACTCTGGCCGACCACTCTATCCAGGACAG
Seq A exon
GCTGGATTTCAAGTGTTCTTGGTGATCGTTGCTGTGTTTTCTGTGCCTGTGTTATTATTTGGTAAACCCCTCTACATCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGG
Seq C2 exon
GGTTACCAGCGTGTGCGCAGGAGCAGTGAGGAGGAGCTTTCTCTCTTGCACACTCATGACTTGGAGGAGGGCAGCAGTCTGGACAGCCACTCTTCCAGCTCTGACAGCCAATCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565-'15-22,'15-21,16-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.6=100)
A:
PF0149614=V_ATPase_I=FE(4.8=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGAGCTGCTCTTTCTG
R:
TGCCCTCCTCCAAGTCATGAG
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]