DreEX0016064 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21309250-21309840:-
Coord C1 exon
chr24:21309800-21309840
Coord A exon
chr24:21309456-21309529
Coord C2 exon
chr24:21309250-21309319
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATGCTGCACCTGCCCACTAGGTG
3' ss Score
7.22
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TTCTGCGTAACGGAGCATGGCAGACCATCATATGGAAGCAG
Seq A exon
GTGGCAGTGGGAGACATAGTCAAGGTGACCAATGGGCAGCACCTCCCGGCTGACATGGTCATAGTGTCCTCCAG
Seq C2 exon
TGAGCCTCAGGCAATGTGTTACACTGAAACGTCCAACTTGGATGGAGAGACCAACTTAAAGATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.7=100)
A:
PF0012215=E1-E2_ATPase=FE(8.7=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCGTAACGGAGCATGG
R:
CTGTCTGATCTTTAAGTTGGTCTCT
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]