MmuEX0006951 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60036968-60044357:-
Coord C1 exon
chr14:60044317-60044357
Coord A exon
chr14:60038974-60039047
Coord C2 exon
chr14:60036968-60037037
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTCCCTGGTCTCTAGGTG
3' ss Score
10.02
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAG
Seq A exon
GTGGCAGTGGGAGACATCGTGAAGGTCCTCAATGGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAG
Seq C2 exon
TGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.8=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGAAATGGCATGTGGC
R:
CTGTCGTATTTTAAGGTTCGTCTCG
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types