RnoEX6051965 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40345402-40349739:-
Coord C1 exon
chr15:40349699-40349739
Coord A exon
chr15:40346409-40346482
Coord C2 exon
chr15:40345402-40345471
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTCCCTGGTCTCTAGGTG
3' ss Score
9.94
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAG
Seq A exon
GTGGCAGTGGGAGACATCGTGAAGGTCCTCAATGGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAG
Seq C2 exon
TGAGCCCCAGGGGATGTGCTATGTTGAAACTGCTAACCTGGATGGTGAGACGAACCTTAAAATACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'18-12,'18-11,19-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.7=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGAAATGGCATGTGGC
R:
CTGTCGTATTTTAAGGTTCGTCTCAC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]