HsaEX0007066 @ hg38
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase phospholipid transporting 8A2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr13:25533273-25540388:+
Coord C1 exon
chr13:25533273-25533313
Coord A exon
chr13:25537988-25538061
Coord C2 exon
chr13:25540319-25540388
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCTCATCCCTGTCTCTCTAGGTG
3' ss Score
12.08
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
TGTTAAGAAATGGTATGTGGCATACCATTATGTGGAAAGAG
Seq A exon
GTGGCAGTGGGAGACATTGTGAAGGTCGTCAATGGGCAGTATCTTCCAGCAGATGTGGTCCTGCTGTCATCCAG
Seq C2 exon
TGAACCTCAGGCAATGTGTTATGTTGAAACAGCTAATCTGGATGGGGAGACGAACCTTAAAATACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(3.4=88.9)
A:
PF0012215=E1-E2_ATPase=FE(10.2=100)
C2:
PF0012215=E1-E2_ATPase=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGAAATGGTATGTGGCATAC
R:
CTGACGTATTTTAAGGTTCGTCTCC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development