GgaEX0025446 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176024876-176029557:+
Coord C1 exon
chr1:176024876-176024916
Coord A exon
chr1:176026774-176026847
Coord C2 exon
chr1:176029488-176029557
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCCTGATTCAACAGGTA
3' ss Score
9.83
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
TTCTAAGAAATGGGATGTGGCAGGACATCGTGTGGAAAGAG
Seq A exon
GTAGCAGTAGGCGATATTGTGAAGGTCACCAATGGGCAACATCTTCCAGCAGACATGATCATTATATCTTCCAG
Seq C2 exon
TGAACCTCAAGCCATGTGCTATATTGAAACAGCTAATCTTGATGGGGAGACGAATCTTAAAATACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.7=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAGAAATGGGATGTGGCAGG
R:
CTGTCGTATTTTAAGATTCGTCTCCC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]