BtaEX6056503 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:34013266-34019168:-
Coord C1 exon
chr12:34019128-34019168
Coord A exon
chr12:34015128-34015201
Coord C2 exon
chr12:34013266-34013335
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTCCCCGGGTTCTAGGTG
3' ss Score
9.32
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGTTAAGGAATGGTATGTGGCAAACCATTGTGTGGAAAGAG
Seq A exon
GTGGCCGTGGGAGACATCGTCAAAGTCGTCAACGGGCAGTACCTTCCAGCAGACGTGGTCCTGCTCTCCTCCAG
Seq C2 exon
TGAACCTCAGGCAATGTGTTACGTTGAAACAGCCAATCTGGACGGGGAGACGAACCTTAAAATACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.7=100)
A:
PF0012215=E1-E2_ATPase=FE(8.7=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGGAATGGTATGTGGCA
R:
CTGACGTATTTTAAGGTTCGTCTCC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]