DreEX0017724 @ danRer10
Exon Skipping
Gene
ENSDARG00000012694 | c3a.1
Description
complement component c3a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-35]
Coordinates
chr1:55482808-55486272:-
Coord C1 exon
chr1:55486060-55486272
Coord A exon
chr1:55485385-55485445
Coord C2 exon
chr1:55482808-55482891
Length
61 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTCTCTCTCTTTCAGTCT
3' ss Score
11.68
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGCGTGTGGAGTTCATGGAGTCAGCGGATGTTTGCAGTCTTGCCAGTAAGAAAGGAAAATACAGAACAACAGTCACTATCCCAAAAGAATCCAGTTTATCGGTTCCATATGTGATCATTCCTATGACACTGGGCAATCACATGATTGAGGTGAAAGCTGCGGCGTATGATGCTGTGTACACTGATGGAGTGAGAAAGGGCCTGAAGGTGGTG
Seq A exon
TCTGAGGGTGTGCTGTTTCCACTGCAGAGGCCAAATGTAGAGCTCAATCCTGTTAAAAACG
Seq C2 exon
GGGATAGTCCTATAATTGTTAGAGCTGATATCCCAGCTGACCGGGTTCCAGGCACTCCTGCTCACACACACATTTCGATTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012694-'27-30,'27-29,28-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.414
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.3=5.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGAGGTGAAAGCTGCGG
R:
ATGTGTGTGTGAGCAGGAGTG
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]