BtaEX6038670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19007543-19010450:+
Coord C1 exon
chr7:19007543-19007755
Coord A exon
chr7:19010197-19010263
Coord C2 exon
chr7:19010364-19010450
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTAACACCATCCAGCCA
3' ss Score
2.84
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAGGGTGGAATTGCTCTACAATCCAGCCTTCTGTAGCCTGGCCACCGCCAAGAAGCGCCACCAGCAGACTATAACAATCCCAGCCAGGTCCTCGGTGGCGGTGCCTTACGTCATTGTGCCCCTGAAGATCGGCCTCCACGAGGTGGAGGTCAAGGCTGCCGTCTACAACCACTTCATCAGTGATGGTGTCAAGAAGACCCTGAAGGTCGTG
Seq A exon
CCAGAAGGCGTAAGAGTCAACAAAACTGTGGCTGTTCGTACACTGAATCCAGAACATCTGGGTCAAG
Seq C2 exon
GGGGAGTGCAGCGAGAGGAAGTCCCAGCTGCAGATCTTAGTGATCAAGTCCCAGACACCGAGTCAGAGACCAAGATCCTCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'27-29,'27-27,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.261 C2=0.700
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.1=5.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACGTCATTGTGCCCCTG
R:
TGGTCTCTGACTCGGTGTCTG
Band lengths:
180-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]