DreEX6034134 @ danRer10
Exon Skipping
Gene
ENSDARG00000087359 | c3a.2
Description
complement component c3a, duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-990415-36]
Coordinates
chr1:55579487-55580074:+
Coord C1 exon
chr1:55579487-55579693
Coord A exon
chr1:55579798-55579858
Coord C2 exon
chr1:55579991-55580074
Length
61 bp
Sequences
Splice sites
3' ss Seq
ATAATATCTCCGTCTTTCAGTCT
3' ss Score
8.5
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTTCGTGTGGAGTTTTTGGAGACAGCAGGTGTTTGCAGTGCTGCCAGTAAGAAAGGGAAATACAGAACAACAGTAAATGTTGACAAGGACTCCAGCGTAGCAGTTTCCTTTGTGATCGTTCCAATGACACTGGAAAGTCAGCATATTGAGGTGAAAGCTTCAATATCAGATTATGAAGATGGAGTTAGAAAGACCCTGAAGGTGGTG
Seq A exon
TCTGAAGGTGTGCTGACTAAATTTCGAACTGAAAAACTGGAGCTTAACCCAGGCAAAAAAG
Seq C2 exon
GGGAAAAACCCTTAGTTCTTCGATCTGGTATACCAGCAGATCAGGTTCCAGGCACACCAGTTAACTCGTACATCACAGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087359-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(5.3=7.1),PF0092717=Transglut_C=FE(66.3=100),PF0275217=Arrestin_C=FE(31.9=100)
A:
PF0092717=Transglut_C=PD(2.9=14.3),PF0275217=Arrestin_C=FE(9.3=100)
C2:
PF0275217=Arrestin_C=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGACACTGGAAAGTCAGC
R:
GTGTGCCTGGAACCTGATCTG
Band lengths:
145-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]