MmuEX6078733 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57356508-57358094:-
Coord C1 exon
chr17:57357882-57358094
Coord A exon
chr17:57356689-57356755
Coord C2 exon
chr17:57356508-57356594
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTATCCACCACCCTCCACAGCCA
3' ss Score
6.3
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAGGGTGGAACTGTTGCATAATCCAGCCTTCTGCAGCATGGCCACCGCCAAGAATCGCTACTTCCAGACCATCAAAATCCCTCCCAAGTCCTCGGTGGCTGTACCGTATGTCATTGTCCCCTTGAAGATCGGCCAACAAGAGGTGGAGGTCAAGGCTGCTGTCTTCAATCACTTCATCAGTGATGGTGTCAAGAAGACACTGAAGGTCGTG
Seq A exon
CCAGAAGGAATGAGAATCAACAAAACTGTGGCCATCCATACACTGGACCCAGAGAAGCTCGGTCAAG
Seq C2 exon
GGGGAGTGCAGAAGGTGGATGTGCCTGCCGCAGACCTTAGCGACCAAGTGCCAGACACAGACTCTGAGACCAGAATTATCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.1=5.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCCCTTGAAGATCGGC
R:
TCTCAGAGTCTGTGTCTGGCA
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: