RnoEX6038515 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9731759-9733330:+
Coord C1 exon
chr9:9731759-9731971
Coord A exon
chr9:9733081-9733147
Coord C2 exon
chr9:9733244-9733330
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTATCCACCGTCATCCACAGCCA
3' ss Score
7.55
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTAAGGGTGGAACTGTTGCATAACCCAGCCTTCTGCAGCATGGCCACTGCCAAGAAGCGGTACTACCAGACCATCGAAATCCCTCCCAAGTCCTCTGTGGCTGTGCCTTATGTCATTGTCCCCTTGAAGATCGGCCTCCAGGAGGTGGAGGTCAAGGCCGCCGTCTTCAACCACTTCATCAGTGATGGTGTCAAGAAGATACTGAAGGTCGTG
Seq A exon
CCAGAAGGAATGAGAGTCAACAAAACTGTGGCTGTCCGTACACTGGATCCAGAACACCTCGGTCAAG
Seq C2 exon
GGGGAGTGCAGAGGGAGGATGTACCTGCAGCAGACCTCAGTGACCAAGTGCCAGACACAGATTCTGAGACCAGAATTCTCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'27-33,'27-30,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.656
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.1=5.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCCCAAGTCCTCTGTG
R:
TGAGGTCTGCTGCAGGTACAT
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]