DreEX0018190 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36478521-36480831:-
Coord C1 exon
chr11:36480681-36480831
Coord A exon
chr11:36478732-36478806
Coord C2 exon
chr11:36478521-36478610
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATATTCCTTGTGTTTCCAGTAC
3' ss Score
7.17
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GTATATCCAAGCAGCCACTTCACCTAAAGATGTTGTGATTCTAGTGGACGTCAGTGGCAGTATGAAGGGTTTAAGACTGACTATAGCCAGACAGACGGTTGCTTCAATACTGGACACACTCGGCGATGATGACTTCTTCAACATTATTGCA
Seq A exon
TACAACCAAGAGATCCATTACGTGGAGCCCTGTCTAAACGGCACTCTGGTTCAAGCTGACAGTACTAATAAGGAT
Seq C2 exon
CACTTTAAAGAGCATCTGGACAAGTTGTTCGCCAAAGGAATCGGACTCCTGGGCAATGCACTGAGCGAGGCTTTCACTATCTTAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PU(24.7=80.4)
A:
PF137681=VWA_3=FE(14.5=100)
C2:
PF137681=VWA_3=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGTGGACGTCAGTGGCA
R:
CATTGCCCAGGAGTCCGATTC
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]