DreEX0018235 @ danRer10
Exon Skipping
Gene
ENSDARG00000076030 | cacnb3b
Description
calcium channel, voltage-dependent, beta 3b [Source:ZFIN;Acc:ZDB-GENE-090127-1]
Coordinates
chr23:27024372-27025460:+
Coord C1 exon
chr23:27024372-27024424
Coord A exon
chr23:27024599-27024618
Coord C2 exon
chr23:27025380-27025460
Length
20 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTATTTTTTACAAGCCA
3' ss Score
5.13
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAAAATGGGCAATGCGTCATCTGGGGGCTGGAGATCCACTCCTCCCTCTGCAG
Seq A exon
CCAAACAGAAGCAGAAGCAG
Seq C2 exon
ACTGAGCATGTTCCTCCCTATGATGTGGTTCCATCCATGAGGCCTGTTGTTCTGGTTGGCCCCTCGTTAAAAGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076030_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=1.000 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.4=55.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGCAATGCGTCATCTGG
R:
CCAGAACAACAGGCCTCATGG
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]