DreEX0018791 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42577147-42584258:-
Coord C1 exon
chr13:42584189-42584258
Coord A exon
chr13:42580591-42580709
Coord C2 exon
chr13:42577147-42577280
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCCTGGTCAGGTG
3' ss Score
10.54
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
GAGCTCTGTGATGATCCTCAGTTCATTGTTGGAGGAGCCACACGCACAGACATCTGTCAAGGAGCTCTGG
Seq A exon
GTGACTGCTGGCTCCTCGCTGCGATTGGCTCGCTGACTCTTAATGAAAGACTCCTTCACAGGGTTGTCCCTCATGGCCAGAGCTTTCAAGATGACTATGCTGGAATTTTCCACTTTCAG
Seq C2 exon
TTCTGGCAGTTCGGTGAATGGGTGGACGTTGTGATCGATGATCGGCTCCCGGTCAAAGACGGAGAGCTCATGTTTGTCCATTCAGCAGAGGGAAATGAGTTCTGGAGTGCCTTGGTGGAAAAAGCCTATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'2-7,'2-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTGTGATGATCCTCAGT
R:
GGCTTTTTCCACCAAGGCACT
Band lengths:
196-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]