RnoEX6038896 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17734827-17738470:+
Coord C1 exon
chr9:17734827-17734896
Coord A exon
chr9:17737443-17737561
Coord C2 exon
chr9:17738337-17738470
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTACCTCCCTGCCTTTAAGGAG
3' ss Score
7.5
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATATCATACATAACCCCCAATTCATTACGAATGATTTCTCTCCCACGGACATCTGCCAAGGCATCCTGG
Seq A exon
GAGACTGCTGGCTGCTGGCCGCCATTGGCTCCCTTACCACGAGCCCCAAACTGCTGTTCCGTGTGGTGCCTAGAAGTCAGAGCTTCAAGAAAAACTATGCTGGCATCTTCCATTTTCAG
Seq C2 exon
CTTTGGCAGTTCGGGCATTGGTTGAACGTGGTGGTGGACGACCGGCTGCCCACTAAGAACAACAAATTGGTGTTCGTGCACGCCTCCCATCGGCAGGAGTTCTGGGGCGCCCTGCTGGAGAAGGCCTACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'2-6,'2-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACATAACCCCCAATTCATTACGA
R:
GTAGGCCTTCTCCAGCAGGG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]