DreEX0018801 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26293923-26300787:-
Coord C1 exon
chr22:26300718-26300787
Coord A exon
chr22:26297688-26297806
Coord C2 exon
chr22:26293923-26294056
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTAACTTTTGTATATTTAGGTG
3' ss Score
7.97
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCTGTCAGAGAATCCTCAGTTTATAGTGGGCGGAGCCACGCGTACAGATATTTGCCAGGGGGCCCTAG
Seq A exon
GTGACTGTTGGCTTTTGGCTGCCATAGCGTCGTTGACATTAAACGACAAGCTGCTTCACAGAGTTGTACCACATGGGCAAAGCTTTACAAATGAGTATGCTGGAATCTTCCACTTCCAG
Seq C2 exon
TTCTGGCAGTTTGGCGAGTGGGTAGACATTGTAATCGATGACCGCTTGCCTGTGAAGGATAAAGAGCTGATGTTTGTTCACTCAGCAGAGGGAAATGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'1-2,'1-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGTCAGAGAATCCTCAGT
R:
AGCATATGCCTTCTCCAGCAG
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]