BtaEX6097867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17808160-17810387:+
Coord C1 exon
chr23:17808160-17808229
Coord A exon
chr23:17809337-17809455
Coord C2 exon
chr23:17810254-17810387
Length
119 bp
Sequences
Splice sites
3' ss Seq
CAGTCCTGCTGTCTTTCCAGGAG
3' ss Score
8.25
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CAAATCACAAGCAATCCTCAATTCATCGTGAATGGGGTCAGCCCAACCGACATCTGCCAGGGTGTGCTCG
Seq A exon
GAGACTGCTGGCTGCTGGCTGCCATTGGCTCTCTCACTGCGTACCCCAAACTGCTGTCCCGTGTGGTGCCCAAGGGGCAGAGCTTCAAGAAGAACTATGCTGGCATCTTCCATTTTCAG
Seq C2 exon
ATCTGGCAGTTTGGGGAGTGGATGGACGTTGTGGTGGATGACCGGCTGCCCACAAAGAATGGCAAGCTGGTGTTTGTGCACTCAGCGGAGCGCACTGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.6=100)
A:
PF0064816=Peptidase_C2=FE(12.9=100)
C2:
PF0064816=Peptidase_C2=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAATCCTCAATTCATCGTG
R:
GCATATGCCTTCTCCAGCAGG
Band lengths:
195-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]