MmuEX6077884 @ mm10
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45642829-45653252:-
Coord C1 exon
chr17:45653183-45653252
Coord A exon
chr17:45643754-45643872
Coord C2 exon
chr17:45642829-45642962
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTACCTGCCTGCCTTTAAGGGG
3' ss Score
7.14
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATATCATTCATAACCCCCAGTTCATCACGAATGACTTCTCTCCCACGGACATCTGCCAAGGGATCCTGG
Seq A exon
GGGACTGCTGGCTCCTGGCTGCCATTGGCTCCCTTACCACCTGCCCCAAACTGCTGTACCGTGTGGTGCCCAGAAATCAGAGCTTCAAGAAGAACTATGCTGGCATCTTCCACTTTCAG
Seq C2 exon
CTTTGGCAGTTTGGGCACTGGTTGAACGTGGTCGTGGACGACCGGCTGCCCACTAGGAACAACAAGCTGGTATTCGTGCACGCCTCCCATCGCCAGGATTTCTGGAGCGCCCTGCTGGAGAAGGCCTACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626-'5-7,'5-5,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.5=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATAACCCCCAGTTCATCACG
R:
GCGTAGGCCTTCTCCAGCAG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types