DreEX0021054 @ danRer10
Exon Skipping
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8873175-8894031:-
Coord C1 exon
chr19:8893543-8894031
Coord A exon
chr19:8879081-8879254
Coord C2 exon
chr19:8873175-8873293
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTCCTCTGCATCAGGAT
3' ss Score
8.33
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AATAGCCTGCGCCCCGCCCTTCAGATTTTAGTCTCGCACAGCAGCTCAGTGTTTTTTATTTGGCCCTCCTCTTCAGTCTTTCATGACTCGATTCGCCTCCAAACACACCCGGCAAAAGTACGTCTAGACATTTTCAACTCGGACATGTGAAGCGAAAAGTGTCGGGAAAAGTTTATAATCTGGGCTGTGTGGATGAAAACTAAAAGCATACGGTTAAAAGCAGCAGTGAACGAGGCGGAGGACAAACAAAAAAAAGTGGAAGAGTTTTAACGTCATCTCTAACGCCAAACTTCCCTTGGCGTTTTTCATCTGTCACGGGGATTTAAGACAACGATGCAGACGGAAAGGGTTATGGATTATGAAGAACGCACAAAATTGTACAGATTGCCCTGAATAACCGCGAGTTTACACGCACTTTCATGCACCTTTGCTAAACCCATCTCATCTCATCTCGCGCTCACACCCTTGTGCTTCGCACTACTCCTGAAA
Seq A exon
GATGTTGTCCAGGCTGAGCGAGTGGTTCTGGAACGAGAGGCTGTGGTTTCCTGGAGACCTGGGCTGGGCTGACCTGGAGGATCGGGACGGTGTCACCTATGCCAAAACAGCAGACCTCTGGGTGACCCTGCCCATTGCACTCACCTTCCTCATCATACGACAAGTTTTCGAGAG
Seq C2 exon
GCTGAAGTGGAGAGTTTAGTGAAAAAGACGGGGCACACGGAGAGAGAGATCCACAGATGGTTCCGGCGACGAAGGAACCAAGAGCGACCAAACCAGCTGAAGAAGTTCAGAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PD(50.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACGATGCAGACGGAAAGG
R:
TGGTTTGGTCGCTCTTGGTTC
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]