DreEX0021691 @ danRer10
Exon Skipping
Gene
ENSDARG00000006602 | chrna2a
Description
cholinergic receptor, nicotinic, alpha 2a (neuronal) [Source:ZFIN;Acc:ZDB-GENE-040108-2]
Coordinates
chr17:5922651-5933649:+
Coord C1 exon
chr17:5922651-5922811
Coord A exon
chr17:5931205-5931356
Coord C2 exon
chr17:5933605-5933649
Length
152 bp
Sequences
Splice sites
3' ss Seq
GATCCGCTATTGTGTGTCAGTTT
3' ss Score
5.81
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CTCAGAGTCAAAAAAACACGGGCAGATCCTCCGAGCATCATGTCTGACCACTGTACAGCTCTCTAGAGGACTCCCGACGCTGGACATGGCGGAAAACCGGATAAAAACACTCCTGAACAATCTCTGGATGTTAATTCTCATCGCAGACCACGTCCAGCCTG
Seq A exon
TTTTGTCAGACGGCTGGATTCATGCACACGCAGAGGACAAACTCTTCCACAAACTCTTCATCGGGTATAATAAGTGGTCCAGACCCGTGCGAAACATCAGCGATGTTGTTATCGTCAAGTTTGGCCTCTCCATCGCTCAGCTTATTGATGTG
Seq C2 exon
GATGAGAAGAATCAAATGATGACGACAAACGTTTGGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006602_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACACGGGCAGATCCTCC
R:
TGTTTCAGCCAAACGTTTGTCG
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]