DreEX0021910 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38458665-38459972:+
Coord C1 exon
chr9:38458665-38458728
Coord A exon
chr9:38459035-38459037
Coord C2 exon
chr9:38459809-38459972
Length
3 bp
Sequences
Splice sites
3' ss Seq
GGTGTGGATTTTAACAATAGAGA
3' ss Score
1.23
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCGTGTAGAGCTGAAGAGGCTATGTGAGATCTTCACCAGGATGTTTGCAGATCCTCACAGCAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGCATGTTCTTGGAGACACTAGTAGACTTCGTCACTGTGCACAGAGAGGATCTCCAGGACTGGCTCTTTGTGCTGCTCACTCAGCTGCTAAAGAAAATGGGAGCTGACCTCTTGGGCTCAGTCCAAGCCAAAGTCCAGAAGGCTCTGGACATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.0=100),PF116403=TAN=FE(35.0=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.2=100),PF116403=TAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCAGATCCTCACAGCA
R:
CAGCACAAAGAGCCAGTCCTG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]