DreEX0022093 @ danRer10
Exon Skipping
Gene
ENSDARG00000044776 | clic3
Description
chloride intracellular channel 3 [Source:ZFIN;Acc:ZDB-GENE-010507-2]
Coordinates
chr21:13567729-13569308:-
Coord C1 exon
chr21:13569183-13569308
Coord A exon
chr21:13568919-13569025
Coord C2 exon
chr21:13567729-13567904
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTTTCATTACAGATA
3' ss Score
10.03
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
AGCTCCAGAGGTATTAAAGGACCTGGCTCCAGGTTCTCAGCCCCCTTTCCTCATTTATAATGGAGAGGTGCGCACTGACACCAACAAGATTGAGGAGTTTCTGGAAGACACCCTTGCTCCCCCACA
Seq A exon
ATATCCCAAGTTATGCTGCCGCTATAAGGAGTCTAACACGGCAGGCGATGACATCTTTCATAAATTCTCTGCATATATCAAAAATCCCAATCCTGGACTCAATGACA
Seq C2 exon
TGCTGGAGAAGAAGTTTCTAAAGAGCTTGATGAAGTTGGATCAGTACCTGTTAACTCCCCTTCCTCATGAACTGGACCAGAATCCAGAGTTATCGACGTCCACTAGACACTACCTGGACGGAAATGCACTCTCTCTTGCTGACTGCAACCTGCTTCCAAAACTACACATCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044776-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.8=44.2)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.1=100)
C2:
PF134101=GST_C_2=FE(42.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTCAGCCCCCTTTCC
R:
GCAGTCAGCAAGAGAGAGTGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]