DreEX0022150 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54660649-54664422:-
Coord C1 exon
chr16:54664306-54664422
Coord A exon
chr16:54661756-54661922
Coord C2 exon
chr16:54660649-54660743
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGTGTCTGTCTCAGTCT
3' ss Score
9.88
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGGAGGCTCTCGCATCGCTCTAAAGATCATTAAGAATGTGGAGAAATATAAAGAAGCAGCCCGACTGGAGATCAACGTGCTGGAGAAGATCAACCAGAGAGATCCAGAAAACAAGAA
Seq A exon
TCTGTGTGTGCAGATGTTGGACTGGTTCGATTATCACGGCCACATGTGTCTGAGTTTCGAGCTGCTGGGTCTCAGTACCTTCGACTTCATGAAGGAGAATAATTACCTGCCGTACTCCATCAGTCAGGTCAGACACATGGCCTACCAGATCTGCCTCGCTGTCAAGT
Seq C2 exon
TTCTCCATGACAACAAGCTGACCCACACTGACCTGAAGCCGGAGAACATCCTGTTTGTGAGCTCAGACTATAGTGTGCTGTACAACGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870-'12-12,'12-10,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTCTCGCATCGCTCTAA
R:
CTTCTCTGCGTTGTACAGCACA
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]