DreEX0022832 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15748921-15755552:-
Coord C1 exon
chr2:15755445-15755552
Coord A exon
chr2:15751236-15751289
Coord C2 exon
chr2:15748921-15748974
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAAAACTTGTTTTCGTCTAGGGT
3' ss Score
7.35
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAAGTGATGGAGAATCAGGACCCAGGGGTCAGCAGGGGATGTTTGGACAAAAGGGAGACGAGGGACCCCGAGGTTTTCCAGGTCTTCCTGGTCCCGTTGGATTGCAG
Seq A exon
GGTTTGCCGGGACCACCAGGCGAGAAGGGAGAGAATGGAGATGTTGGCCCAATG
Seq C2 exon
GGTCCACCCGGTCCTCCTGGCCCTAGAGGTCCTCAGGGTTCTAGTGGAGCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014-'50-50,'50-49,51-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.3=19.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAATCAGGACCCAGGG
R:
GAACCCTGAGGACCTCTAGGG
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]