GgaEX6044067 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10258996-10261451:+
Coord C1 exon
chr8:10258996-10259103
Coord A exon
chr8:10260930-10260983
Coord C2 exon
chr8:10261398-10261451
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCTTGTTTTTTAGGGT
3' ss Score
13.09
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGGTGATGGGGAGCCAGGCCCAAGAGGTCAGCAAGGAATGTTTGGACAAAAAGGTGATGAAGGTCCTCGAGGCTTCCCTGGCCCTCCAGGCCCTATTGGCTTACAG
Seq A exon
GGTTTGCCTGGCCCACCAGGTGAAAAAGGTGAAAATGGGGATGTGGGCCCGATG
Seq C2 exon
GGTCCGCCTGGTCCTCCAGGTCCAAGAGGCCCCCAAGGTCCTAATGGAGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'61-63,'61-62,63-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(56.5=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000008321fB6327
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGAGGTCAGCAAGGAAT
R:
AGCTCCATTAGGACCTTGGGG
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]