DreEX0023118 @ danRer10
Exon Skipping
Gene
ENSDARG00000035809 | col1a1b
Description
collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
Coordinates
chr12:3077764-3079163:-
Coord C1 exon
chr12:3079110-3079163
Coord A exon
chr12:3078267-3078320
Coord C2 exon
chr12:3077764-3077925
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTGTTTTTGTTTTATTAGGGT
3' ss Score
8.41
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGACCTGCTGGTGCTACTGGACCTAAAGGTGCTCGTGGTGGTGCTGGACCTCCT
Seq A exon
GGTGCTACTGGTTTCCCTGGTGCTGCTGGTAGAGTCGGACCTCCAGGCCCCTCA
Seq C2 exon
GGTGCTTCTGGACCGCCTGGACCTACTGGTCCTGCTGGTAAAGAGGGACAAAGAGGAGCCCGTGGTGAGAAGGGACCCGCTGGCCGTCCTGGAGAGGCTGGAGCTGCTGGACCCCCAGGACCCTCCGGAGAGAGGGGTAGCCCTGGTCCCGATGGTCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035809_MULTIEX1-23/31=22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAGGTGCTCGTGGTGGTG
R:
CTCCAGCCTCTCCAGGACG
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]