RnoEX0022992 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82757110-82757624:+
Coord C1 exon
chr10:82757110-82757163
Coord A exon
chr10:82757272-82757317
Coord C2 exon
chr10:82757463-82757624
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCGATGTTCTCTCTTGCCAGGGT
3' ss Score
8.92
5' ss Seq
CTGGTCCCT
5' ss Score
-5.5
Exon sequences
Seq C1 exon
GGTAACGTTGGTGCTCCTGGACCCAAAGGTTCTCGTGGTGCTGCTGGTCCCCCT
Seq A exon
GGTGCTACTGGTTTCCCTGGTGCTGCTGGTCGTGTTGGTCCCCCTG
Seq C2 exon
GGAAATGCTGGACCCCCTGGCCCTCCCGGTCCCGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTGAGACTGGTCCCGCTGGACGTCCTGGTGAAGTTGGTCCCCCAGGTCCCCCTGGCCCTGCTGGTGAGAAAGGATCTCCTGGTGCTGATGGACCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'71-47,'71-46,72-47
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100)
A:
PF0139113=Collagen=FE(25.8=100)
C2:
PF0139113=Collagen=PD(12.1=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGTTCTCGTGGTGCTG
R:
CAACTTCACCAGGACGTCCAG
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]