GgaEX0028392 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23730836-23735177:+
Coord C1 exon
chr2:23730836-23730889
Coord A exon
chr2:23730982-23731035
Coord C2 exon
chr2:23735070-23735177
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTGATTTTTATCTTTAGGGC
3' ss Score
11.12
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCCGTTGGTGCTGCTGGTCCTGCTGGCCCTCGTGGTGATGCTGGTCCTCCT
Seq A exon
GGCATGACTGGTTTCCCTGGTGCTGCTGGAAGAGTCGGTCCTCCAGGCCCTGCT
Seq C2 exon
GGTGAGCGTGGTGCTCCTGGTAACCCAGGTCCCAGTGGTGCTTTGGGTGCTCCTGGTCCTCATGGCCAAGTTGGTCCTTCTGGAAAGCCTGGAAACCGTGGTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-30/39=29-35
Average complexity
C3
Mappability confidence:
89%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(13.1=61.1)
A:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=FE(20.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGCTGCTGGTCCTG
R:
CGGTTTCCAGGCTTTCCAGAA
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]