MmuEX6088970 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94808584-94809093:+
Coord C1 exon
chr11:94808584-94808637
Coord A exon
chr11:94808748-94808801
Coord C2 exon
chr11:94808932-94809093
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCAATGTTCTCTCCTACCAGGGT
3' ss Score
9.43
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGTAACGTTGGTGCTCCTGGACCCAAAGGTCCTCGTGGTGCTGCTGGTCCCCCT
Seq A exon
GGTGCTACTGGCTTCCCTGGTGCTGCTGGCCGTGTCGGTCCCCCTGGTCCCTCT
Seq C2 exon
GGAAATGCTGGACCCCCTGGCCCTCCCGGTCCCGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCAGGTCCCCCCGGTCCTGCTGGTGAGAAAGGATCTCCTGGTGCTGATGGACCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'41-39,'41-38,42-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGTCCTCGTGGTGCTG
R:
GACCAACTTCACCAGGACGTC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: