DreEX0023120 @ danRer10
Exon Skipping
Gene
ENSDARG00000035809 | col1a1b
Description
collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
Coordinates
chr12:3071939-3077925:-
Coord C1 exon
chr12:3077764-3077925
Coord A exon
chr12:3076708-3076815
Coord C2 exon
chr12:3071939-3071992
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTTCTTGTCTTTAGGGT
3' ss Score
10.87
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGTGCTTCTGGACCGCCTGGACCTACTGGTCCTGCTGGTAAAGAGGGACAAAGAGGAGCCCGTGGTGAGAAGGGACCCGCTGGCCGTCCTGGAGAGGCTGGAGCTGCTGGACCCCCAGGACCCTCCGGAGAGAGGGGTAGCCCTGGTCCCGATGGTCCTCTT
Seq A exon
GGTCTCGCTGGAGCTCCTGGACCCCCTGGTGTTATTGGATCTCGTGGTATTGTTGGTCTTCCTGGACAGAGAGGAGAGAGAGGTTTCGGCGGCTTGGCAGGTCCTTCT
Seq C2 exon
GGTCCTGCTGGTCCTGCTGGTCCTTCTGGTCCTGCTGGTGCTCGTGGAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035809_MULTIEX1-25/31=24-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(12.5=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCTGGACCGCCTG
R:
CTCCACGAGCACCAGCAG
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]