DreEX0027513 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:188721-191362:-
Coord C1 exon
chr12:191195-191362
Coord A exon
chr12:190060-190176
Coord C2 exon
chr12:188721-188871
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGACTGGACTCTTTGTAGGAG
3' ss Score
5.15
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACGGTGCTGCTCACTGTCATGGATATGATGAGGCTGGAGAAGATCGAGTTTGGAGGCATTCAGGGGAAATCTCTCAGCCAGATTGTCCAGCGTTTGCATGAAGACTTCCTGCAGACGTACAAATCCTTCTCAGAGAAGCCCTACGACTGCCTGGATGTTAATAATATG
Seq A exon
GAGTTTGAATCAGATTTCGCAGAGTTCCAGCTGACTGTGGATGATACGAACAGGCGATTGGGAGCCATCTTCTGCAACGCTTTTGATGACGCTTCAGGTCTGGAACACTCCTTCAAG
Seq C2 exon
GTTTTGGACATGTTTGGCAGACTGCTGGAGCAGCCGCTGATAGCAGCCGAGGCTCAGGCCAGATATCCCATCCTGATCAAACTGTTTGACAAGCAGCTGGAAGACTGTAAGACGATTTTCAAGAAGCAGATGCAGATGGAGGAAACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.9=100)
A:
PF083857=DHC_N1=FE(8.9=100)
C2:
PF083857=DHC_N1=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGCCAGATTGTCCAGC
R:
CGGGTTTCCTCCATCTGCATC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]