GgaEX6015795 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1040353-1042814:+
Coord C1 exon
chr18:1040353-1040520
Coord A exon
chr18:1042290-1042406
Coord C2 exon
chr18:1042605-1042814
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTGCCTTCCTACAGGAT
3' ss Score
11.33
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
Seq A exon
GATTTTGAGCAAGATGCCTTTGATTTCCAGCAGAAAGTAGAAGACATTGACCGGCGCCTGGGGACTGTTTTCATCCAGGCCTTTGATGATGCCTCGGACTTGGATCACACCTTCAAG
Seq C2 exon
CTGCTGGAGATGTTTGGGAGCCTTTTGGAGCGGCCAGTAATCGCTGCGGATGCTGCTGGCAAATACCCTGACCTCATCCGCATGTTCAGCAGTGCCTTGAGTGATGCTAGGCTGATCTACTCCAGGCACGTACGGGCAGAGCTGGAGCTTGGTGAGTAGAAATTGCTGAGTAAGGCTGATTTATTAGAGCTGGATTTGGATGAATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(17.2=100)
A:
PF083857=DHC_N1=FE(11.9=100)
C2:
PF083857=DHC_N1=PD(15.4=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTTGGATCTGATGAAGC
R:
ACTGCTGAACATGCGGATGAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]