GgaEX6015795 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1022280-1024682:+
Coord C1 exon
chr18:1022280-1022447
Coord A exon
chr18:1024217-1024333
Coord C2 exon
chr18:1024532-1024682
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTGCCTTCCTACAGGAT
3' ss Score
11.33
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
Seq A exon
GATTTTGAGCAAGATGCCTTTGATTTCCAGCAGAAAGTAGAAGACATTGACCGGCGCCTGGGGACTGTTTTCATCCAGGCCTTTGATGATGCCTCGGACTTGGATCACACCTTCAAG
Seq C2 exon
CTGCTGGAGATGTTTGGGAGCCTTTTGGAGCGGCCAGTAATCGCTGCGGATGCTGCTGGCAAATACCCTGACCTCATCCGCATGTTCAGCAGTGCCTTGAGTGATGCTAGGCTGATCTACTCCAGGCACGTACGGGCAGAGCTGGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTTGGATCTGATGAAGC
R:
ACTGCTGAACATGCGGATGAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]