MmuEX6086199 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66126599-66133716:-
Coord C1 exon
chr11:66133549-66133716
Coord A exon
chr11:66130564-66130680
Coord C2 exon
chr11:66126599-66126749
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCATGCGATGTCTCCTCAGGAA
3' ss Score
8.65
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATCTTCTGAAGACAGCCTTGGATCTCAACAATCTGGAAAAGCTTGAGTTCAGTGGCCTCAGAGGAAACTCCCTGAGTCAGAAAGTCCAACGCATGCATGAGGAATTTGAGGAGATGTACAAGGTCTTCTTGGACTGCTCCTATGACTGTTTGGACCCCAAGGGCACG
Seq A exon
GAATTTGAAAATGATGTCTGTGAGTTTAACAAAAGAGTGGAAGATCTTGACCGGAGACTGGGGACTATCTTAATTCAAGCTTTTGATGATGCACCTGATGTGGAACATGCCTTTAAG
Seq C2 exon
CTACTGGACATCACAGGAACCCTCATCAAAAGACCCCTGGTAGCACAGGATGTATCACAAAAATACCTGGCCCTCATCCGAATGTTCAGCACAGAACTGGATGCTGTGAGGGTCATCTACAGTCAGCACATCCAGAAGGAGGCAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'7-12,'7-11,8-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.5=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAGTTCAGTGGCCTCAG
R:
AGATGACCCTCACAGCATCCA
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types