BtaEX6087280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30994211-30999818:+
Coord C1 exon
chr19:30994211-30994378
Coord A exon
chr19:30996495-30996611
Coord C2 exon
chr19:30999668-30999818
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCATTTGCTGTCTCTTCAGGAA
3' ss Score
9.82
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GATCTTCTGAAGACAACTTCGGATTTCCACAAACTGGAAAAGCTTGAGTTCAGTGGTATCAGAGGAAGTGCCTTGAGCCAGCAGGCCCAGCAGATGTACACCGAATTTCAAGAGATGTACAGGGTCTTCTCAGACTCTTCCTACGACTGCTTGGATCTCCAGAGCGTG
Seq A exon
GAATTTGAAAATGACATCTCTGACTTTAATCAGAGAGTAGAAGACCTTGACAGGAGGCTGGGGACTGTCTTTATTCAGGCCTTCGATGACGCCCCTGGCTTGGAGCATGCCTTCAAG
Seq C2 exon
CTGCTGGACATAGCAGGAAGCCTCCTGGAGAGACCAGTGGTAGCACAGGATGCCTCTGAAAGATACCTGGTGCTCATCCGCATGTTTAGCGAGGATCTGGATGCTGTGAGGCTGATCCACAGTCAGCGTGTCCAGGAGGAGGCAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.4=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCTTGAGTTCAGTGGT
R:
GTGGATCAGCCTCACAGCATC
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]