HsaEX6021168 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11629417-11636784:+
Coord C1 exon
chr17:11629417-11629584
Coord A exon
chr17:11632587-11632703
Coord C2 exon
chr17:11636634-11636784
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATATATGGTGTCTCTTCAGGAC
3' ss Score
9.8
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGTCTTCTGAAGACGGCCCTGGATTTCCACAAACTGGGAAAGGTGGAGTTCAGCGGCGTCAGAGGGAATGCTCTGAGTCAGCAGGTCCAGCAAATGCATGAAGAATTTCAAGAGATGTACAGGCTTCTCTCAGGATCCTCCTCCGACTGCCTGTACCTCCAAAGCACG
Seq A exon
GACTTTGAAAATGACGTCTCTGAATTTAACCAGAAAGTAGAAGATCTTGACCGAAGATTGGGGACTATCTTTATTCAAGCTTTTGATGATGCACCTGGCTTGGAGCATGCCTTTAAG
Seq C2 exon
CTGCTAGACATAGCAGGAAACCTCCTTGAAAGACCGCTGGTAGCGAGGGATACATCTGATAAATACCTGGTCCTCATCCAAATGTTCAACAAAGATCTGGATGCAGTGAGGATGATCTACAGTCAGCACGTCCAGGAGGAAGCAGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(6.5=100)
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGCAGGTCCAGCAAATG
R:
AGTTCTGCTTCCTCCTGGACG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains