DreEX0027795 @ danRer10
Exon Skipping
Gene
ENSDARG00000032238 | dnm3a
Description
dynamin 3a [Source:ZFIN;Acc:ZDB-GENE-040724-76]
Coordinates
chr20:14944422-14967591:-
Coord C1 exon
chr20:14967482-14967591
Coord A exon
chr20:14951854-14951965
Coord C2 exon
chr20:14944422-14944657
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGATGTTATTTTCACCATAGGAA
3' ss Score
8.54
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GAAAAAGAGAAGAAATACATGCTTCCTCTGGACAACTTGAAGGTGCGAGACATAGAAAAGAGCTTCATGTCCAGCAAACATGTCTTTGCCATCTTTAACACAGAGCAGAG
Seq A exon
GAACGTGTATAAGGACTACAGGCATCTGGAGCTGGCCTGTGACACTCAGGATGATGTGGACAGCTGGAAGGCCTCTCTGCTGAGAGCTGGGGTTTACCCGGAGAAAACCACA
Seq C2 exon
GTAGAAGAGTTCATCCACTCTGAGTTGCTGGCTCAGTTGTATTCTTCAGGAGATCAGTACTCTCTGATGGACGAGTCTCCTGAGCAAGCCTTGCGCAGAGAGGAGGTTCTGCGTACCCATGCTGCCCTGAAAGAGGCTCTGAACATCATCACTGACATCTCCACCACCACCATCTCCACCCCGCTGCCACCTCCCGTAGATAACTCCTGGCTATCCAGTGGCTCGCTTCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032238_MULTIEX1-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.061 C2=0.407
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.4=100),PF0061614=RasGAP=FE(25.4=100)
A:
PF0016924=PH=PD(34.1=76.3),PF0061614=RasGAP=FE(26.1=100)
C2:
PF0061614=RasGAP=PD(4.2=7.6),PF0221213=GED=PD(56.5=65.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAACTTGAAGGTGCGAG
R:
ATGGTGGTGGTGGAGATGTCA
Band lengths:
255-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]