MmuEX0015306 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162019828-162134566:-
Coord C1 exon
chr1:162134457-162134566
Coord A exon
chr1:162084033-162084144
Coord C2 exon
chr1:162019828-162019992
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAACTCTAGGAA
3' ss Score
11.58
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GAGAAAGAAAAGAAATATATGCTTCCCCTGGACAACCTGAAGGTCCGGGATGTGGAGAAGGGCTTCATGTCCAGCAAGCACGTCTTCGCACTCTTCAACACCGAGCAAAG
Seq A exon
GAATGTATACAAAGACTATCGCTTCCTGGAGCTGGCCTGTGATTCCCAGGAAGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCCGGGGTCTACCCAGATAAATCTGTA
Seq C2 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-'45-38,'45-34,47-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.309
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.6=100)
A:
PF0016924=PH=PD(27.9=76.3)
C2:
PF0221213=GED=PU(41.3=69.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATATATGCTTCCCCTGGACA
R:
TGTTTTTGGAATTAAGTCTCGGATGC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types