HsaEX1012088 @ hg38
Exon Skipping
Gene
ENSG00000197959 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr1:172253573-172379182:+
Coord C1 exon
chr1:172253573-172253682
Coord A exon
chr1:172308728-172308839
Coord C2 exon
chr1:172379018-172379182
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAACTCCAGGAA
3' ss Score
10.48
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GAAAAAGAAAAGAAGTACATGCTTCCCTTGGACAACCTGAAAGTTCGGGATGTGGAAAAGAGCTTTATGTCTAGCAAGCACATCTTTGCACTCTTTAATACAGAGCAAAG
Seq A exon
GAATGTATACAAAGACTATCGCTTCCTTGAGCTGGCATGTGATTCCCAGGAGGATGTCGACAGCTGGAAGGCATCTCTACTAAGAGCTGGGGTCTATCCTGACAAATCTGTA
Seq C2 exon
GCTGAAAATGATGAGAATGGACAAGCAGAAAACTTTTCCATGGACCCACAATTGGAGAGGCAAGTGGAGACCATTCGCAACCTCGTAGACTCCTACATGTCCATTATCAACAAATGTATCCGAGATCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197959-'53-73,'53-68,57-73
Average complexity
C3
Mappability confidence:
93%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.291
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.6=100)
A:
PF0016924=PH=PD(27.9=76.3)
C2:
PF0221213=GED=PU(41.3=69.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTCCCTTGGACAACC
R:
TCATAAGGTGCATTATTGTTTTTGGA
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains